Gene Expression database of Normal and Tumor tissues 2 (GENT2) is an updated version of GENT, which has provided a user-friendly search platform for gene expression patterns across different normal and tumor tissues compiled from public gene expression data sets. © STRING Consortium 2020. Additionally, the expression level of different splicing variants can be retrieved from the database. To address these shortcomings, we present BloodSpot ( www.bloodspot.eu ), which includes and greatly extends our previously released database HemaExplorer, a database of gene expression profiles … The database is linked with PeanutBase, the main genomic resource of peanut. Explore your genes of interest: bc-GenExMiner is a statistical mining tool of a breast cancer gene expression database (DNA microarrays and RNA-seq). RED features integration and visualization of gene expression profiles based on curated and quality-controlled RNA-Seq data … Considering all human immune cell types and conditions studied, we identified cis-eQTLs for a total of 12,254 unique genes, which represent 61% of all protein-coding genes expressed in these cell types. This dataset comes from a proof-of-concept study published in 1999 by Golub et al. We used the Serial Analysis of Gene Expression (SAGE) database to identify differences between solid tumors and cell lines, hoping to detect genes that could potentially explain differences in drug sensitivity. Gene expression Gene expression is the process by which information from a gene is used in the synthesis of a functional gene product. These products are often proteins, but in non-protein coding genes such as transfer RNA (tRNA) genes, the product is a functional RNA according to the Cental Dogma. Other gene co-expression databases have been developed by other researchers, but the information for plant genes is rather limited. The Gene Expression Database (GXD) is a community resource of mouse developmental expression information. The database contains tissue-specific gene expression profiles or expressed sequence tag (EST) data, cis-regulatory module (CRM) data, and combinatorial gene regulation data. If the crawler fails to access the endpoint, the score drops from … Submit or search annotated microarray data. I'd like to find gene expression data for a few different primary cell lines. SAGE libraries were available for both solid tumors and cell lines from breast, colon, ovarian, pancreatic, and prostate carcinomas and from gliomas and … ArrayExpress -- A public repository for microarray gene expression data at the EBI. GXD integrates different types of expression data at the transcript and protein level and captures expression information from many different mouse strains and mutants. Genes/Proteins: 17554. The SHIELD database is a resource for dissemination and comparison of inner-ear gene expression datasets, initially developed by laboratories associated with Harvard Medical School and now including Creighton University School of Medicine, Oregon Health & Science University and Rutgers University. The AGEMAP database includes expression changes for 8,932 genes in 16 tissues as a function of age. Gene expression is the process by which information from a gene is used in the synthesis of a functional gene product that enable to produce protein as the end product. Therefore, we constructed PLANEX as a co-expressed gene list and functional annotation for Arabidopsis thaliana, Glycine max, Hordeum vulgare, Oryza sativa, Solanum lycopersicum, Triticum aestivum, Vitis vinifera and Zea mays . This project aims at developing a effective database model for the biological experiment data that is highly variable and to provide a user interface to interact with database. By Elizabeth Pennisi Sep. 10, 2020 , 2:00 PM. This database is fully operational. The output displays the gene expression pattern in graphical as well as tabular form, along with further options to download the sequence data. Gene expression data from published studies on small molecules, such as histone deacetylase (HAD) inhibitors, were positively connected with their samples using other HDA inhibitors in the database. Assays: 32679 Stages: 22 Images: 429251. Researchers create gene expression database to gain new insights into pneumococcal infections . When the human genome was … Gene expression data. What's New? ‘Invaluable’ database helps solve mystery of how genes are regulated. ArrayWiki -- an enabling technology for sharing public microarray data repositories and meta-analyses. These products are often proteins, but in non-protein-coding genes such as transfer RNA (tRNA) or small nuclear RNA (snRNA) genes, the product is a functional RNA.Gene expression is summarized in the … A gene expression network (GEN) is an ideal choice to grasp such expression profile similarities among genes simultaneous … OryzaExpress: an integrated database of gene expression networks and omics annotations … Gene… Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets (including GTEx data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock … GENSAT Main Area of Focus: Gene Expression Nervous System Atlas (GENSAT) is an NIH-funded, publicly available gene expression atlas of the developing and adult central nervous system in the mouse. Spatial Search: Image Browse : Query Entries: Gene & Pathway Summaries: Analysis Tools : Example Data . Unlike existing related databases, RED not only provides large-scale whole-genome expression profiles, but also is equipped with online tools for dynamic construction of gene co-expression networks and characterization of HK and TS genes based on massive gene expression profiles. by University of Maryland School of Medicine. Simply normal. We found great heterogeneity in the amount of … Assay: ISH . To address this gap, the DICE (Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics) project was established. Area Name Value; Availability (100.0) Alive (Alive Score) Alive monitoring score that takes the value from 0 to 100. … Query profiles of estrogen-treated cells connected positively to the estrogen-treated samples in the database, and negatively to an anti-estrogenic compound. 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